Since June 2013 I have been using IPython as my lab notebook. This page is meant to serve as the forward facing access portal for the public (those not interested in the .pynb files). Anyone can download all the files (zip file, project on GitHub) to view (and execute) in IPython. Below are links to some active project entries rendered in the IPython Notebook Viewer.
BiGo - methratio error
In addition to using IPython as platform for documenting my work, I am beginning to develop automated workflows in IPython. Here is my first attempt. It takes a fasta file and provides a graph showing representive GO terms.
Between 2010 - 2013 my notebook platform of choice was Evernote. You can access the notebook ..