May 26, 2025
Day three. Looking for missing files.. working on slides
Narrowed down issue with missing “WGBS” files from Peve and Ptua to a possible error in wget Azenta named files.
Need to get full data sets for both species and run through Bismark.. and beyond..
---
title: "ROL-PI Day three"
description: "Más sequence files to bismark, por favor"
categories: [methylation, e5]
#citation:
date: 05-26-2025
image: http://gannet.fish.washington.edu/seashell/snaps/Monosnap_Assess_WGBS_data_sample_numbers_by_species__Issue_34__urol-e5timeseries_molecular_2025-05-26_12-43-24.png # finding a good image
author:
- name: Steven Roberts
url:
orcid: 0000-0001-8302-1138
affiliation: Professor, UW - School of Aquatic and Fishery Sciences
affiliation-url: https://robertslab.info
#url: # self-defined
draft: false # setting this to `true` will prevent your post from appearing on your listing page until you're ready!
format:
html:
code-fold: FALSE
code-tools: true
code-copy: true
highlight-style: github
code-overflow: wrap
#runtime: shiny
---
```{r setup, include=FALSE}
library(knitr)
library(readr)
library(DT)
library(shiny)
library(plotly)
knitr::opts_chunk$set(
echo = TRUE, # Display code chunks
eval = FALSE, # Evaluate code chunks
warning = FALSE, # Hide warnings
message = FALSE, # Hide messages
fig.width = 6, # Set plot width in inches
fig.height = 4, # Set plot height in inches
fig.align = "center", # Align plots to the center
comment = "" # Prevents appending '##' to beginning of lines in code output
)
```
Day three. Looking for missing files.. working on slides
Narrowed down issue with missing "WGBS" files from Peve and Ptua to a possible error in wget Azenta named files.
Need to get full data sets for both species and run through Bismark.. and beyond..