Took the top 100 genes in component 24 (of 35 rank) and did Context Dependent Regulation Ananysis

Summary of output

These CSV files contain the detailed results of context-dependent regulatory analysis, including interaction statistics, p-values, context strengths, and regulatory relationships for each analyzed gene-regulator pair.

high_methylation_gene_lncrna_correlations.csv (29626.7 KB) high_methylation_gene_methylation_correlations.csv (339626.1 KB) high_methylation_gene_mirna_correlations.csv (40.0 KB) lncrna_mirna_context.csv (1544.7 KB) low_mirna_gene_lncrna_correlations.csv (36676.7 KB) low_mirna_gene_methylation_correlations.csv (341486.6 KB) low_mirna_gene_mirna_correlations.csv (81.5 KB) methylation_mirna_context.csv (1898.0 KB) multi_way_interactions.csv (248.9 KB)

Ptua

Report: https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_151255/reports/context_dependent_analysis_report.html

Multiway Regulation: https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_151255/tables/multi_way_interactions.csv

Peve

Report: https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_144034/reports/context_dependent_analysis_report.html

Multiway Regulation: https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_144034/tables/multi_way_interactions.csv

Apul

Report: https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_140602/reports/context_dependent_analysis_report.html

Multiway Regulation: https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_140602/tables/multi_way_interactions.csv

--- title: "Contra on 24" description: "Epigenetic factors on barnacle" categories: [e5, barnacle, coral] #citation: date: 11-13-2025 image: http://gannet.fish.washington.edu/seashell/snaps/2025-11-13_04-58-09.png # finding a good image author: - name: Steven Roberts url: orcid: 0000-0001-8302-1138 affiliation: Professor, UW - School of Aquatic and Fishery Sciences affiliation-url: https://robertslab.info #url: # self-defined draft: false # setting this to `true` will prevent your post from appearing on your listing page until you're ready! format: html: code-fold: FALSE code-tools: true code-copy: true highlight-style: github code-overflow: wrap #runtime: shiny --- Took the top 100 genes in component 24 (of 35 rank) and did Context Dependent Regulation Ananysis Summary of output These CSV files contain the detailed results of context-dependent regulatory analysis, including interaction statistics, p-values, context strengths, and regulatory relationships for each analyzed gene-regulator pair. high_methylation_gene_lncrna_correlations.csv (29626.7 KB) high_methylation_gene_methylation_correlations.csv (339626.1 KB) high_methylation_gene_mirna_correlations.csv (40.0 KB) lncrna_mirna_context.csv (1544.7 KB) low_mirna_gene_lncrna_correlations.csv (36676.7 KB) low_mirna_gene_methylation_correlations.csv (341486.6 KB) low_mirna_gene_mirna_correlations.csv (81.5 KB) methylation_mirna_context.csv (1898.0 KB) multi_way_interactions.csv (248.9 KB) # Ptua Report: <https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_151255/reports/context_dependent_analysis_report.html> Multiway Regulation: `https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_151255/tables/multi_way_interactions.csv` # Peve Report: <https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_144034/reports/context_dependent_analysis_report.html> Multiway Regulation: `https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_144034/tables/multi_way_interactions.csv` # Apul Report: <https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_140602/reports/context_dependent_analysis_report.html> Multiway Regulation: `https://gannet.fish.washington.edu/v1_web/owlshell/bu-github/ConTra/output/context_dependent_analysis_20251108_140602/tables/multi_way_interactions.csv`