Geoduck RRBS Library - First Look
Fifty RRBS Libraries were constructed by Hollie and sequenced (Maybe? these numbers do not match nightingales).
EPI-230_S37_L004
EPI-229_S38_L004
EPI-227_S35_L004
EPI-215_S31_L004
EPI-214_S30_L004
EPI-209_S29_L004
EPI-208_S28_L004
EPI-206_S27_L004
EPI-205_S26_L004
EPI-200_S25_L003
EPI-199_S24_L003
EPI-194_S23_L003
EPI-193_S22_L003
EPI-188_S21_L003
EPI-187_S20_L003
EPI-185_S19_L003
EPI-184_S18_L003
EPI-182_S17_L003
EPI-181_S16_L003
EPI-176_S15_L003
EPI-175_S14_L003
EPI-170_S13_L002
EPI-169_S12_L002
EPI-168_S11_L002
EPI-167_S10_L002
EPI-162_S9_L002
EPI-161_S8_L002
EPI-160_S7_L002
EPI-159_S6_L002
EPI-154_S5_L002
EPI-153_S4_L002
EPI-152_S3_L002
EPI-151_S2_L002
EPI-135WG_S42_L005
EPI-44_S41_L005
EPI-43_S40_L005
EPI-42_S39_L005
EPI-145_S38_L005
EPI-41_S38_L005
EPI-143_S37_L005
EPI-136_S36_L005
EPI-135_S35_L005
EPI-128_S34_L005
EPI-127_S33_L005
EPI-120_S32_L005
EPI-119_S31_L005
EPI-113_S30_L005
EPI-111_S29_L005
EPI-104_S28_L005
EPI-103_S27_L005
Here are some details on batch 01
The first batch came in late December.
[ ] EPI-103_S27_L005_R1_..> 28-Dec-2016 10:33 1.2G
[ ] EPI-103_S27_L005_R2_..> 28-Dec-2016 10:33 1.1G
[ ] EPI-104_S28_L005_R1_..> 28-Dec-2016 10:33 1.7G
[ ] EPI-104_S28_L005_R2_..> 28-Dec-2016 10:33 1.7G
[ ] EPI-111_S29_L005_R1_..> 28-Dec-2016 10:33 1.5G
[ ] EPI-111_S29_L005_R2_..> 28-Dec-2016 10:33 1.5G
[ ] EPI-113_S30_L005_R1_..> 28-Dec-2016 10:33 1.5G
[ ] EPI-113_S30_L005_R2_..> 28-Dec-2016 10:33 1.4G
[ ] EPI-119_S31_L005_R1_..> 28-Dec-2016 10:33 1.6G
[ ] EPI-119_S31_L005_R2_..> 28-Dec-2016 10:33 1.6G
[ ] EPI-120_S32_L005_R1_..> 28-Dec-2016 10:33 1.4G
[ ] EPI-120_S32_L005_R2_..> 28-Dec-2016 10:33 1.3G
[ ] EPI-127_S33_L005_R1_..> 28-Dec-2016 10:33 1.3G
[ ] EPI-127_S33_L005_R2_..> 28-Dec-2016 10:33 1.2G
[ ] EPI-128_S34_L005_R1_..> 28-Dec-2016 10:33 1.4G
[ ] EPI-128_S34_L005_R2_..> 28-Dec-2016 10:33 1.4G
[ ] EPI-135_S35_L005_R1_..> 28-Dec-2016 10:33 1.6G
[ ] EPI-135_S35_L005_R2_..> 28-Dec-2016 10:33 1.6G
[ ] EPI-136_S36_L005_R1_..> 28-Dec-2016 10:33 1.5G
[ ] EPI-136_S36_L005_R2_..> 28-Dec-2016 10:33 1.5G
[ ] EPI-143_S37_L005_R1_..> 28-Dec-2016 10:33 1.2G
[ ] EPI-143_S37_L005_R2_..> 28-Dec-2016 10:33 1.2G
[ ] EPI-145_S38_L005_R1_..> 28-Dec-2016 10:33 1.4G
[ ] EPI-145_S38_L005_R2_..> 28-Dec-2016 10:33 1.4G
and is also in Cyverse/CoGe and analyzed
This first batch was aligned to Bismarck using this version of the genome.
These are the files generated
BAM file are all in a Notebook
https://genomevolution.org/coge/NotebookView.pl?lid=1927
Written on January 28, 2017