Mox With Purpose
Having spent a day in Hyak, I think I know have a workflow that makes sense.
In short, use a
date variable to name working directory and sbatch scripts, using
rsync from owl to sync mox directory to accessible urls.
1) log into mox.
2) Navigate to user directory
[sr320@mox2 ~]$ cd /gscratch/srlab/sr320/ [sr320@mox2 sr320]$ ls analyses blastdb data jobs [sr320@mox2 sr320]$
3) set today variable
4) Basing sbatch script on prior one.
cp jobs/0804_1818.sh jobs/$today.sh
5) nano to edit
6 set working directory
sbatch -p srlab -A srlab 0804_1818.sh
8) wait, cross fingers, repeat.
9) log into Owl via ssh.
10 sync my mox directory to owl
rsync -avz firstname.lastname@example.org:/gscratch/srlab/sr320/ /var/services/web/halfshell/bu-mox/