Oly Assembly Mapping

We have the following several Oly draft assemblies. Available here

Here are some mapping stats from taking a subsetted BS dataset and random RAD dataset.

Assembly BS aligned reads RAD alignment rate
canu_sb_01 85011 (12%) 0.20%
ol-canu-170623 88056 (12%) 0.26%
redundans_sjw_01 70500 (9.7%) 0.21%
redundans_sjw_02 70188 (9.7%) 0.29%
redundans_sjw_02b 81394 (11%) 0.19%
platanus_sb_02 23060 (3.2%) 1.21%
canu_sjw_01 60126 (8.3%) 0.37%
platanus_sb_01 3127 (0.43%) 0.05%
platanus_sb_02 23060 (3.2%) 1.21%
racon_sjw_01 73864 (10%) 0.22%
redundans_sb_01 9448 (1.3%) 0.01%
redundans_sb_02 16906 (2.3%) 0.83%
soap_bgi_01 22609 (3.1%) 0.85%
Written on November 6, 2017