PRJNA856813 (leachate_high) RefSeq functional annotations

Descriptions and gene biotypes come directly from GCF_963853765.1 / RS_2024_06. This is annotation and ranking, not ontology or pathway enrichment.

Leachate High Higher Fdr Lt 0.05

Genes: 26; RefSeq-characterized descriptions: 19 (73.1%).

  • LOC136270275 (NCBI:GeneID:136270275): 3’-5’ exoribonuclease HELZ2-like (log2FC=3.54; adjusted p=1.56e-05)
  • LOC105341503 (NCBI:GeneID:105341503): double-stranded RNA-specific adenosine deaminase (log2FC=4.41; adjusted p=1.56e-05)
  • LOC136271462 (NCBI:GeneID:136271462): protein unc-13 homolog C-like (log2FC=5.40; adjusted p=0.000447)
  • LOC105344283 (NCBI:GeneID:105344283): agmatinase, mitochondrial (log2FC=2.09; adjusted p=0.00429)
  • LOC117686837 (NCBI:GeneID:117686837): transient receptor potential cation channel subfamily M member-like 2 (log2FC=1.81; adjusted p=0.00429)
  • LOC105346129 (NCBI:GeneID:105346129): acyl-CoA desaturase (log2FC=1.36; adjusted p=0.00429)
  • LOC105326711 (NCBI:GeneID:105326711): armadillo-like helical domain containing protein 1 (log2FC=1.15; adjusted p=0.00976)
  • LOC105337045 (NCBI:GeneID:105337045): centrosome-associated protein CEP250 (log2FC=1.87; adjusted p=0.013)
  • LOC105336709 (NCBI:GeneID:105336709): protein asteroid homolog 1 (log2FC=3.70; adjusted p=0.0164)
  • LOC136276270 (NCBI:GeneID:136276270): ankyrin-1-like (log2FC=3.99; adjusted p=0.0244)
  • LOC105329346 (NCBI:GeneID:105329346): tubulin alpha-1A chain (log2FC=3.35; adjusted p=0.0249)
  • LOC105324388 (NCBI:GeneID:105324388): BTB/POZ domain-containing protein 17 (log2FC=0.94; adjusted p=0.0284)
  • LOC105327340 (NCBI:GeneID:105327340): fibrocystin-L (log2FC=0.84; adjusted p=0.0284)
  • LOC117692505 (NCBI:GeneID:117692505): interferon alpha-inducible protein 27-like protein 2A (log2FC=1.27; adjusted p=0.0284)
  • LOC105324078 (NCBI:GeneID:105324078): ATP-dependent RNA helicase DHX58 (log2FC=1.27; adjusted p=0.0316)

Leachate High Lower Fdr Lt 0.05

Genes: 20; RefSeq-characterized descriptions: 10 (50.0%).

  • LOC105347083 (NCBI:GeneID:105347083): small nuclear ribonucleoprotein E (log2FC=-1.49; adjusted p=0.000638)
  • LOC105324927 (NCBI:GeneID:105324927): contactin (log2FC=-1.12; adjusted p=0.00429)
  • LOC105335950 (NCBI:GeneID:105335950): SAP domain-containing ribonucleoprotein (log2FC=-0.80; adjusted p=0.00429)
  • LOC105332900 (NCBI:GeneID:105332900): slit homolog 2 protein (log2FC=-0.84; adjusted p=0.013)
  • LOC105330652 (NCBI:GeneID:105330652): importin subunit alpha-5 (log2FC=-2.44; adjusted p=0.0168)
  • LOC105341609 (NCBI:GeneID:105341609): F-box/LRR-repeat protein 4-like (log2FC=-4.26; adjusted p=0.0249)
  • LOC136275534 (NCBI:GeneID:136275534): IgGFc-binding protein-like (log2FC=-3.95; adjusted p=0.0389)
  • LOC105339179 (NCBI:GeneID:105339179): CD151 antigen (log2FC=-0.92; adjusted p=0.0407)
  • LOC105329399 (NCBI:GeneID:105329399): calaxin (log2FC=-3.09; adjusted p=0.0407)
  • LOC105345192 (NCBI:GeneID:105345192): cartilage matrix protein (log2FC=-0.85; adjusted p=0.0409)

Gene-biotype over-representation

One-sided hypergeometric tests compare each significant direction with all genes having DESeq2 results; Benjamini-Hochberg adjustment covers both directions and all biotypes.

Many oyster loci retain automated or uncharacterized RefSeq labels. Functional claims should be based on formal ontology/pathway enrichment or orthology-aware analysis rather than names alone.