Raw-data reanalyses

PRJEB18614

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,679 KB)

PRJEB58194

• refseq annotation report
• refseq annotation report

Data files

• f0_exposed/refseq_biotype_enrichment.tsv (1 KB)
• f0_exposed/refseq_biotype_summary.tsv (1 KB)
• f1_direct/refseq_biotype_enrichment.tsv (1 KB)
• f1_direct/refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,629 KB)

PRJEB86618

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,709 KB)

PRJEB86646

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,719 KB)

PRJNA1329250

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,977 KB)

PRJNA298285

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,118 KB)

PRJNA407831

• refseq annotation report
• refseq annotation report

Data files

• h24/refseq_biotype_enrichment.tsv (1 KB)
• h24/refseq_biotype_summary.tsv (1 KB)
• h6/refseq_biotype_enrichment.tsv (1 KB)
• h6/refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,550 KB)

PRJNA515169

• refseq annotation report
• refseq annotation report

Data files

• refseq_gene_annotations.tsv (2,581 KB)
• vcrassostreae_J2_9/refseq_biotype_enrichment.tsv (1 KB)
• vcrassostreae_J2_9/refseq_biotype_summary.tsv (1 KB)
• vtasmaniensis_LGP32/refseq_biotype_enrichment.tsv (1 KB)
• vtasmaniensis_LGP32/refseq_biotype_summary.tsv (1 KB)

PRJNA516762

Data files

• refseq_gene_annotations.tsv (2,406 KB)

PRJNA593309

• refseq annotation report
• refseq annotation report

Data files

• heat/refseq_biotype_enrichment.tsv (1 KB)
• heat/refseq_biotype_summary.tsv (1 KB)
• oshv1/refseq_biotype_enrichment.tsv (1 KB)
• oshv1/refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (1,698 KB)

PRJNA694496

• analysis report
• functional enrichment report
• refseq annotation report

Data files

• analysis_summary.tsv (1 KB)
• cross_study_descriptive_overlap.tsv (15 KB)
• ena_input_verification.json (2 KB)
• enrichment/enrichment_manifest.json (1 KB)
• enrichment/enrichment_qc.json (1 KB)
• enrichment/functional_enrichment.tsv (21 KB)
• enrichment/gprofiler_response_metadata.json (1,102 KB)
• enrichment/selected_higher_request.json (377 KB)
• enrichment/selected_higher_response.json (920 KB)
• enrichment/selected_lower_request.json (379 KB)
• enrichment/selected_lower_response.json (2,358 KB)
• exclude_selected_A_comparison.tsv (2,931 KB)
• exclude_selected_A_summary.tsv (1 KB)
• fastqc_partial.tsv (1 KB)
• gene_results_annotated.tsv (4,199 KB)
• input_sha256.json (1 KB)
• recovered_fastq_validation.json (1 KB)
• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,133 KB)
• salmon_qc_partial.tsv (1 KB)
• salmon_qc_summary.tsv (1 KB)
• sample_correlations.png (76 KB)
• sample_deseq2_qc.tsv (1 KB)
• sample_pca.csv (1 KB)
• sample_pca.png (58 KB)
• sample_pca_variance.csv (1 KB)
• sample_vst_correlations.csv (1 KB)
• selected_vs_control_MA.png (321 KB)
• sessionInfo.txt (2 KB)
• top_25_genes.tsv (5 KB)

PRJNA735889

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (3,070 KB)

PRJNA756710

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,310 KB)

PRJNA826964

• refseq annotation report

Data files

• refseq_biotype_enrichment.tsv (1 KB)
• refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (2,643 KB)

PRJNA852380

• refseq annotation report
• refseq annotation report

Data files

• refseq_gene_annotations.tsv (2,265 KB)
• vibrio_12h/refseq_biotype_enrichment.tsv (1 KB)
• vibrio_12h/refseq_biotype_summary.tsv (1 KB)
• vibrio_24h/refseq_biotype_enrichment.tsv (1 KB)
• vibrio_24h/refseq_biotype_summary.tsv (1 KB)

PRJNA856813

• refseq annotation report
• refseq annotation report

Data files

• leachate_high/refseq_biotype_enrichment.tsv (1 KB)
• leachate_high/refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (1,677 KB)
• tire_particles_high/refseq_biotype_enrichment.tsv (1 KB)
• tire_particles_high/refseq_biotype_summary.tsv (1 KB)

PRJNA913164

• refseq annotation report
• refseq annotation report

Data files

• heat/refseq_biotype_enrichment.tsv (1 KB)
• heat/refseq_biotype_summary.tsv (1 KB)
• heat_emersion/refseq_biotype_enrichment.tsv (1 KB)
• heat_emersion/refseq_biotype_summary.tsv (1 KB)
• refseq_gene_annotations.tsv (1,968 KB)