Registered studies
From registry/study_registry.csv. Studies whose data status begins with simulated are MVP demo data.
| study_id | species | assay_type | tissue | life_stage | stressor_class | phenotype | resilience_classification | sample_size | data_status | analysis_status |
|---|---|---|---|---|---|---|---|---|---|---|
| CGIG_HEAT_RNASEQ_PRJNA516762 | Crassostrea gigas | rnaseq | gill | juvenile | temperature | thermal_tolerance | stress_response | 30 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_THERMOTOL_RNASEQ_PRJNA694496 | Crassostrea gigas | rnaseq | whole_larva | umbo_larva | temperature | thermal_tolerance | resilience_associated | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_OSHV1_RNASEQ_PRJNA1329250 | Crassostrea gigas | rnaseq | whole_soft_tissue | spat | pathogen_challenge | immune_responsiveness | disease_associated | 42 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_OA_RNASEQ_PRJNA826964 | Crassostrea gigas | rnaseq | hepatopancreas | not_recorded | ocean_acidification_pH | metabolic_resilience | stress_response | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_SALINITY_RNASEQ_PRJNA756710 | Crassostrea gigas | rnaseq | gill | not_recorded | salinity | disease_susceptibility | disease_associated | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_OA_RNASEQ_PRJNA1196326 | Crassostrea gigas | rnaseq | whole_larva | eyed_larva | ocean_acidification_pH | acidification_tolerance | environmental_exposure | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |
| CGIG_STARVATION_RNASEQ_PRJEB86618 | Crassostrea gigas | rnaseq | whole_soft_tissue | spat | nutritional_limitation | disease_resistance | resilience_associated | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_HAB_RNASEQ_PRJEB18614 | Crassostrea gigas | rnaseq | gill | adult | harmful_algal_bloom_exposure | metabolic_resilience | stress_response | 24 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_OA_RNASEQ_PRJNA735889 | Crassostrea gigas | rnaseq | whole_organism | juvenile | ocean_acidification_pH | acidification_tolerance | environmental_exposure | 50 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized_exploratory_tank_clustering_unmodeled |
| CGIG_HEAT_RNASEQ_PRJEB86646 | Crassostrea gigas | rnaseq | whole_soft_tissue | spat | temperature | disease_resistance | resilience_associated | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_HEAT_RNASEQ_PRJNA913164 | Crassostrea gigas | rnaseq | gill | adult | temperature | thermal_tolerance | stress_response | 44 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_MULTISTRESS_RNASEQ_PRJNA913164 | Crassostrea gigas | rnaseq | gill | adult | multi_stressor_exposure | thermal_tolerance | stress_response | 42 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_OSHV1_RNASEQ_PRJNA593309 | Crassostrea gigas | rnaseq | whole_organism | juvenile | pathogen_challenge | immune_responsiveness | disease_associated | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_HEAT_RNASEQ_PRJNA593309 | Crassostrea gigas | rnaseq | whole_organism | juvenile | temperature | disease_resistance | resilience_associated | 5 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_TIRELEACHATE_RNASEQ_PRJNA856813 | Crassostrea gigas | rnaseq | gill | adult | pollutant_exposure | metabolic_resilience | stress_response | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_TIREPARTICLE_RNASEQ_PRJNA856813 | Crassostrea gigas | rnaseq | gill | adult | pollutant_exposure | metabolic_resilience | stress_response | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_VCRASSOSTREAE_RNASEQ_PRJNA515169 | Crassostrea gigas | rnaseq | whole_organism | spat | pathogen_challenge | immune_responsiveness | disease_associated | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_VTASMANIENSIS_RNASEQ_PRJNA515169 | Crassostrea gigas | rnaseq | whole_organism | spat | pathogen_challenge | immune_responsiveness | disease_associated | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_HEAT6H_RNASEQ_PRJNA407831 | Crassostrea gigas | rnaseq | gill | adult | temperature | thermal_tolerance | stress_response | 23 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_HEAT24H_RNASEQ_PRJNA407831 | Crassostrea gigas | rnaseq | gill | adult | temperature | thermal_tolerance | stress_response | 23 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_LARVAL_OA_RNASEQ_PRJNA298285 | Crassostrea gigas | rnaseq | whole_organism | larva | ocean_acidification_pH | acidification_tolerance | environmental_exposure | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_LARVAL_HEAT_RNASEQ_PRJNA298285 | Crassostrea gigas | rnaseq | whole_organism | larva | temperature | thermal_tolerance | environmental_exposure | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |
| CGIG_LARVAL_MULTISTRESS_RNASEQ_PRJNA298285 | Crassostrea gigas | rnaseq | whole_organism | larva | multi_stressor_exposure | larval_viability | environmental_exposure | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |
| CGIG_PESTO_F0_RNASEQ_PRJEB58194 | Crassostrea gigas | rnaseq | whole_organism | embryo_larva | pollutant_exposure | larval_viability | environmental_exposure | 36 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_PESTO_F1DIRECT_RNASEQ_PRJEB58194 | Crassostrea gigas | rnaseq | whole_organism | embryo_larva | pollutant_exposure | larval_viability | environmental_exposure | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_PESTO_F1PARENTAL_RNASEQ_PRJEB58194 | Crassostrea gigas | rnaseq | whole_organism | embryo_larva | pollutant_exposure | larval_viability | environmental_exposure | 12 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |
| CGIG_HEAT37_RNASEQ_PRJNA1511593 | Crassostrea gigas | rnaseq | gill | adult | temperature | thermal_tolerance | stress_response | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |
| CGIG_HEAT42_RNASEQ_PRJNA1511593 | Crassostrea gigas | rnaseq | gill | adult | temperature | thermal_tolerance | stress_response | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |
| CGIG_VIBRIO12H_RNASEQ_PRJNA852380 | Crassostrea gigas | rnaseq | digestive_gland | juvenile | pathogen_challenge | immune_responsiveness | disease_associated | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_VIBRIO24H_RNASEQ_PRJNA852380 | Crassostrea gigas | rnaseq | digestive_gland | juvenile | pathogen_challenge | immune_responsiveness | disease_associated | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_harmonized |
| CGIG_HEAT12H_RNASEQ_PRJNA1244231 | Crassostrea gigas | rnaseq | gill | adult | temperature | thermal_tolerance | stress_response | 6 | public_raw_aree_reanalysis_complete | raw_reanalysis_complete_not_harmonized |