PRJNA856813 (tire_particles_high) RefSeq functional annotations

Descriptions and gene biotypes come directly from GCF_963853765.1 / RS_2024_06. This is annotation and ranking, not ontology or pathway enrichment.

Tire Particles High Higher Fdr Lt 0.05

Genes: 5; RefSeq-characterized descriptions: 2 (40.0%).

  • LOC136276270 (NCBI:GeneID:136276270): ankyrin-1-like (log2FC=4.44; adjusted p=7.04e-05)
  • LOC105332528 (NCBI:GeneID:105332528): baculoviral IAP repeat-containing protein 8 (log2FC=2.25; adjusted p=0.0258)

Tire Particles High Lower Fdr Lt 0.05

Genes: 3; RefSeq-characterized descriptions: 2 (66.7%).

  • LOC105320455 (NCBI:GeneID:105320455): protein mono-ADP-ribosyltransferase PARP6 (log2FC=-1.34; adjusted p=0.0258)
  • LOC117687253 (NCBI:GeneID:117687253): scavenger receptor class F member 1-like (log2FC=-2.79; adjusted p=0.0258)

Gene-biotype over-representation

One-sided hypergeometric tests compare each significant direction with all genes having DESeq2 results; Benjamini-Hochberg adjustment covers both directions and all biotypes.

Many oyster loci retain automated or uncharacterized RefSeq labels. Functional claims should be based on formal ontology/pathway enrichment or orthology-aware analysis rather than names alone.