Schedule

Note

Note this schedule is remnant of last offering and is subject to change.

Date	Questions	Topic	Assignment	Project Status
last week		Preparing for class	bash
mar 31	week 01	Getting Started	NCBI Blast	Establish Repos
apr 06	week 02	RNA-seq + Grace Crandall	Differential Gene Expression	Explore data, QC, add hashes
apr 13	week 03	RStudio:knitr/ Fundamentals	Explain and knit	ID endpoint in Readme. Start workflow.
apr 20	week 04	Remote Computing	Hyak	Complete sliced workflow (->endpoint)
apr 27	week 05	Alignment Data	Variants and Visualize	A weeks’ progress
may 04	week 06	Quatro	Publishing Slides	Readme w/ results (links), has plan for 4 weeks, issues resolved
may 11	week 07	Epigenetics	Amnesty, Motifs, and IGV	Launch project report (rpubs), all sections noted
may 18	week 08	Genomic Ranges	BEDtools	example / mock ultimate figure
may 25	week 09	Archiving	Backup	clear repo organization
jun 01	week 10	Presentations	Final Release	Compendium

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