| last week |
|
Preparing for class |
bash |
|
| mar 27 |
week 01 |
Getting Started |
NCBI Blast |
Establish Repos |
| apr 03 |
week 02 |
RNA-seq + Ariana Huffmyer |
Differential Gene Expression |
Explore data, QC, add hashes |
| apr 10 |
week 03 |
RStudio:knitr/ Fundamentals |
Explain and knit |
ID endpoint in Readme. Start workflow. |
| apr 17 |
week 04 |
Remote Computing |
Hyak |
Complete sliced workflow (->endpoint) |
| apr 24 |
week 05 |
Quatro |
Publishing Slides |
Readme w/ results (links), has plan for 4 weeks, issues resolved |
| may 01 |
week 06 |
Alignment Data |
Variants and Visualize |
A weeks’ progress |
| may 08 |
week 07 |
Epigenetics + Matt George |
Amnesty, Motifs, and IGV |
Launch project report (rpubs), all sections noted |
| may 15 |
week 08 |
Genomic Ranges |
BEDtools |
example / mock ultimate figure |
| may 22 |
week 09 |
Archiving |
Backup |
clear repo organization |
| may 29 |
week 10 |
Presentations |
Final Release |
Compendium |
|
|
|
|
|
