Bismarck(1) •
Bismark(1) •
CoGe(1) •
DML(2) •
IGV(1) •
IGV,(1) •
ML(1) •
PPP(3) •
R,(5) •
RNA seq(2) •
RNA seq,(1) •
SNP(1) •
acidification(5) •
annotation(1) •
assembly,(1) •
bedtools(1) •
bedtools,(1) •
bismark(10) •
bismark,(1) •
blast(2) •
blast,(1) •
bs,(1) •
bsmap,(2) •
ceabigr(4) •
cnv(1) •
commandline,(1) •
coral,(1) •
cyverse,(1) •
dda(1) •
excel,(1) •
fastqc,(1) •
fish546(1) •
genome,(2) •
geoduck(4) •
geoduck,(1) •
gigas(2) •
gigas,(1) •
join,(1) •
jupyter,(1) •
larvae(1) •
linux(1) •
lncRNA(1) •
lncRNA,(1) •
methylation(13) •
methylkit(3) •
mox(8) •
multiqc,(1) •
mysql(1) •
ncbi,(1) •
olympia,(2) •
oyster(3) •
oyster,(2) •
proteomics(2) •
python,(1) •
random(3) •
salmon,(1) •
scaffold(1) •
shellfish(1) •
sqlshare(1) •
sra,(1) •
swissprot,(1) •
teaching(1) •
tidyverse(1) •
tidyverse,(2) •
transcriptome(2) •
updated(2) •
video(1) •
wgs(1) •
windows(1)
Bismarck 1
- Geoduck RRBS - Batch 01 Methylation Calls • January 29, 2017
Bismark 1
- Going deep into Bismark • January 22, 2022
CoGe 1
- Geoduck RRBS - Batch 01 Methylation Calls • January 29, 2017
DML 2
- OAKL to the Browser • May 25, 2018
- OAKLy Doekly • May 22, 2018
IGV 1
- Geoduck 10 Day DMR annotations • February 7, 2017
IGV, 1
- OAKL to the Browser • May 25, 2018
ML 1
- What's a Weka going to do? • January 22, 2022
PPP 3
- Geoduck 10 Day DMR annotations • February 7, 2017
- Geoduck RRBS - Batch 01 Methylation Calls • January 29, 2017
- Geoduck RRBS Library - First Look • January 28, 2017
R, 5
- All the gigas in methylkit • November 15, 2021
- Get in Control - Cv multiomics • November 3, 2021
- Hemato qPCR in R • June 10, 2021
- OAKL to the Browser • May 25, 2018
- OAKLy Doekly • May 22, 2018
RNA seq 2
- Evaluating A pulcra alignment rates • March 3, 2023
- Kallisto v HiSat • March 3, 2023
RNA seq, 1
- What's a Weka going to do? • January 22, 2022
SNP 1
- Where are the SNPs? • May 3, 2023
acidification 5
- Geoduck 10 Day DMR annotations • February 7, 2017
- Geoduck RRBS - Batch 01 Methylation Calls • January 29, 2017
- Geoduck RRBS Library - First Look • January 28, 2017
- Oly OA 48hr Sampling Event • October 6, 2016
- Two Treatment Temperature Trial • December 22, 2016
annotation 1
- Where are the lncRNAs? • October 20, 2016
assembly, 1
- Olympia Oyster Genome Read Check • October 19, 2016
bedtools 1
- Taking the oysters to bed • December 1, 2021
bedtools, 1
- Where are the lncRNAs? • October 20, 2016
bismark 10
- FROGER Day 01 • March 5, 2020
- FROGER Day 02 • March 6, 2020
- FROGER Day 03 • March 7, 2020
- For Duck Sake • March 20, 2020
- Geoduck-EPI on Hi-C Draft • May 10, 2018
- Looking for the big Duck cat • December 31, 2019
- Rebising Oly MBD • February 7, 2020
- Refreshing the Caligus • February 7, 2020
- Reproducing whole-Duck analyses, with a few bumps • December 30, 2019
- Stepping back in BS • December 3, 2021
bismark, 1
- OAKLy Doekly • May 22, 2018
blast 2
- Geoduck 10 Day DMR annotations • February 7, 2017
- Navigating Annotation • July 8, 2023
blast, 1
- Geoduck Gonad Gene Annotations • September 23, 2016
bs, 1
- Fidalgo 8 Oly Oyster BS • October 22, 2016
bsmap, 2
- Analysis of two oyster samples • October 11, 2016
- Fidalgo 8 Oly Oyster BS • October 22, 2016
ceabigr 4
- Determining exon and intron methylation • October 23, 2022
- Determining gene methylaiton • August 16, 2022
- Finding the predominant • September 14, 2022
- Relationship of isoform count and methylation • August 16, 2022
cnv 1
- CNVs based on ploidy • August 10, 2023
commandline, 1
- Blast2GO • September 20, 2016
coral, 1
- SRA and Cyverse • September 21, 2016
cyverse, 1
- SRA and Cyverse • September 21, 2016
dda 1
- Going through DDA • February 13, 2017
excel, 1
- Geoduck Gonad Gene Annotations • September 23, 2016
fastqc, 1
- Olympia Oyster Genome Read Check • October 19, 2016
fish546 1
- Olympia Oyster Genome Read Check • October 19, 2016
genome, 2
- Olympia Oyster Genome Read Check • October 19, 2016
- Where are the lncRNAs? • October 20, 2016
geoduck 4
- Geoduck 10 Day DMR annotations • February 7, 2017
- Geoduck RRBS - Batch 01 Methylation Calls • January 29, 2017
- Geoduck RRBS Library - First Look • January 28, 2017
- Geoduck data table • October 3, 2016
geoduck, 1
- Geoduck Gonad Gene Annotations • September 23, 2016
gigas 2
- Abacus fail • February 15, 2017
- Going through DDA • February 13, 2017
gigas, 1
- Analysis of two oyster samples • October 11, 2016
join, 1
- Geoduck Gonad Gene Annotations • September 23, 2016
jupyter, 1
- Blast2GO • September 20, 2016
larvae 1
- Huddling • August 18, 2023
linux 1
- Going through DDA • February 13, 2017
lncRNA 1
- e5 lncRNA comparison • August 11, 2023
lncRNA, 1
- Where are the lncRNAs? • October 20, 2016
methylation 13
- FROGER Day 01 • March 5, 2020
- FROGER Day 02 • March 6, 2020
- FROGER Day 03 • March 7, 2020
- Filtering CT SNPs • August 8, 2023
- For Duck Sake • March 20, 2020
- Geoduck 10 Day DMR annotations • February 7, 2017
- Geoduck RRBS - Batch 01 Methylation Calls • January 29, 2017
- Geoduck RRBS Library - First Look • January 28, 2017
- Looking for the big Duck cat • December 31, 2019
- Rebising Oly MBD • February 7, 2020
- Refreshing the Caligus • February 7, 2020
- Reproducing whole-Duck analyses, with a few bumps • December 30, 2019
- methylation distance matrix • August 15, 2023
methylkit 3
- All the gigas in methylkit • November 15, 2021
- Get in Control - Cv multiomics • November 3, 2021
- Sex-specific OA influence • December 13, 2021
mox 8
- FROGER Day 01 • March 5, 2020
- FROGER Day 02 • March 6, 2020
- FROGER Day 03 • March 7, 2020
- For Duck Sake • March 20, 2020
- Looking for the big Duck cat • December 31, 2019
- Rebising Oly MBD • February 7, 2020
- Refreshing the Caligus • February 7, 2020
- Reproducing whole-Duck analyses, with a few bumps • December 30, 2019
multiqc, 1
- Olympia Oyster Genome Read Check • October 19, 2016
mysql 1
- Blast2GO • September 20, 2016
ncbi, 1
- SRA and Cyverse • September 21, 2016
olympia, 2
- Fidalgo 8 Oly Oyster BS • October 22, 2016
- Olympia Oyster Genome Read Check • October 19, 2016
oyster 3
- Abacus fail • February 15, 2017
- Analysis of two oyster samples • October 11, 2016
- Going through DDA • February 13, 2017
oyster, 2
- Fidalgo 8 Oly Oyster BS • October 22, 2016
- Olympia Oyster Genome Read Check • October 19, 2016
proteomics 2
- Abacus fail • February 15, 2017
- Going through DDA • February 13, 2017
python, 1
- Fidalgo 8 Oly Oyster BS • October 22, 2016
random 3
- February & March Bits • March 1, 2023
- January Bits • January 6, 2023
- Reading, Writing and more • February 6, 2023
salmon, 1
- Where are the lncRNAs? • October 20, 2016
scaffold 1
- Fidalgo 8 Oly Oyster BS • October 22, 2016
shellfish 1
- CoGe on Fidalgo Sibs • May 5, 2016
sqlshare 1
- Geoduck Gonad Gene Annotations • September 23, 2016
sra, 1
- SRA and Cyverse • September 21, 2016
swissprot, 1
- Geoduck Gonad Gene Annotations • September 23, 2016
teaching 1
- Bioinformatics Class Projects • December 19, 2016
tidyverse 1
- Hemato qPCR in R • June 10, 2021
tidyverse, 2
- All the gigas in methylkit • November 15, 2021
- Get in Control - Cv multiomics • November 3, 2021
transcriptome 2
- Mytilus trossulus Iso-seq • July 20, 2023
- Mytilus trossulus Iso-seq Annotation • August 7, 2023
updated 2
- Refreshing the Caligus • February 7, 2020
- Reproducing whole-Duck analyses, with a few bumps • December 30, 2019
video 1
- Prospective Student Days 2022 • February 17, 2022
wgs 1
- SRA and Cyverse • September 21, 2016
windows 1
- Going through DDA • February 13, 2017